{
  "_id": "6ac8ab72de46216d5edd5616",
  "Package": "vistla",
  "Title": "Detecting Influence Paths with Information Theory",
  "Version": "2.1.2",
  "Authors@R": "c(\nperson(\nc(\"Miron\",\"B.\"),\"Kursa\",\nrole=c(\"aut\",\"cre\"),\nemail=\"m@mbq.me\",\ncomment=c(ORCID=\"0000-0001-7672-648X\")\n)\n)",
  "Description": "Traces information spread through interactions between\nfeatures, utilising information theory measures and a\nhigher-order generalisation of the concept of widest paths in\ngraphs. In particular, 'vistla' can be used to better\nunderstand the results of high-throughput biomedical\nexperiments, by organising the effects of the investigated\nintervention in a tree-like hierarchy from direct to indirect\nones, following the plausible information relay circuits. Due\nto its higher-order nature, 'vistla' can handle multi-modality\nand assign multiple roles to a single feature.",
  "License": "GPL (>= 3)",
  "BugReports": "https://gitlab.com/mbq/vistla/-/issues",
  "URL": "https://gitlab.com/mbq/vistla",
  "Language": "en-GB",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.1",
  "Repository": "https://mbq.r-universe.dev",
  "Date/Publication": "2025-11-13 23:18:39 UTC",
  "RemoteUrl": "https://gitlab.com/mbq/vistla",
  "RemoteRef": "HEAD",
  "RemoteSha": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-09 08:45:51 UTC",
    "User": "root"
  },
  "Author": "Miron B. Kursa [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7672-648X>)",
  "Maintainer": "Miron B. Kursa <m@mbq.me>",
  "_user": "mbq",
  "_type": "src",
  "_file": "vistla_2.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/8e0e231990c53c5109974be10daa0a4d0d178c5f4596a28aba96a963d48d4efb",
  "_filesize": 383378,
  "_sha256": "8e0e231990c53c5109974be10daa0a4d0d178c5f4596a28aba96a963d48d4efb",
  "_expires": "2027-01-17T08:53:04.000Z",
  "_created": "2026-10-09T08:45:51.000Z",
  "_published": "2026-10-09T08:53:06.430Z",
  "_buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113742804518,
      "time": 79,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11605345186"
    },
    {
      "job": 113742804474,
      "time": 132,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11604449681"
    },
    {
      "job": 113742804523,
      "time": 68,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11604294686"
    },
    {
      "job": 113742804484,
      "time": 119,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11604639218"
    },
    {
      "job": 113742804347,
      "time": 120,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11604319641"
    },
    {
      "job": 113742804476,
      "time": 387,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11605355509"
    },
    {
      "job": 113742804490,
      "time": 173,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11605420218"
    },
    {
      "job": 113742804402,
      "time": 225,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11604164769"
    },
    {
      "job": 113741836647,
      "time": 167,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11605150687"
    },
    {
      "job": 113742804220,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11604912719"
    },
    {
      "job": 113742804442,
      "time": 303,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11604174850"
    },
    {
      "job": 113742804570,
      "time": 110,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11605415175"
    },
    {
      "job": 113742804456,
      "time": 89,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11604444436"
    },
    {
      "job": 113742804423,
      "time": 317,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11605270851"
    },
    {
      "job": 113742804445,
      "time": 70,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11604783360"
    }
  ],
  "_upstream": "https://gitlab.com/mbq/vistla",
  "_commit": {
    "id": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
    "author": "Miron B. Kursa <m@mbq.me>",
    "committer": "Miron B. Kursa <m@mbq.me>",
    "message": "Version updated to 2.1.2\n",
    "time": 1763075919
  },
  "_maintainer": {
    "name": "Miron B. Kursa",
    "email": "m@mbq.me",
    "orcid": "0000-0001-7672-648X"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "grid",
      "role": "Imports"
    }
  ],
  "_owner": "gitlab-mbq",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 2
    }
  ],
  "_tags": [],
  "_userbio": {
    "uuid": 489199,
    "type": "user",
    "name": "Miron Kursa",
    "followers": 31,
    "description": "Only using GitHub to waste Microsoft resources. Find me on GitLab for the cool stuff (;"
  },
  "_downloads": {
    "count": 413,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vistla"
  },
  "_devurl": "https://gitlab.com/mbq/vistla",
  "_searchresults": 4,
  "_topics": [
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/vistla.html"
  ],
  "_homeurl": "https://gitlab.com/mbq/vistla",
  "_realowner": "mbq",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2022-08-18"
    },
    {
      "version": "1.0.1",
      "date": "2022-11-24"
    },
    {
      "version": "1.1.0",
      "date": "2023-07-07"
    },
    {
      "version": "2.0.0",
      "date": "2023-10-05"
    },
    {
      "version": "2.0.1",
      "date": "2023-12-14"
    },
    {
      "version": "2.0.2",
      "date": "2024-06-06"
    },
    {
      "version": "2.0.3",
      "date": "2024-09-27"
    },
    {
      "version": "2.0.4",
      "date": "2025-01-26"
    },
    {
      "version": "2.1.0",
      "date": "2025-02-06"
    },
    {
      "version": "2.1.1",
      "date": "2025-02-19"
    },
    {
      "version": "2.1.2",
      "date": "2025-11-27"
    }
  ],
  "_exports": [
    "branches",
    "collapse",
    "ensemble",
    "flow",
    "hierarchy",
    "mi_scores",
    "mle_coerce",
    "path_to",
    "paths",
    "prune",
    "vistla",
    "write.dot"
  ],
  "_datasets": [
    {
      "name": "cchain",
      "title": "Synthetic continuous data representing a simple mediator chain",
      "object": "cchain",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Y",
        "M1",
        "M2",
        "M3",
        "M4",
        "T"
      ],
      "rows": 20,
      "table": true,
      "tojson": true
    },
    {
      "name": "chain",
      "title": "Synthetic data representing a simple mediator chain",
      "object": "chain",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Y",
        "M1",
        "M2",
        "M3",
        "M4",
        "T"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "junction",
      "title": "Synthetic data representing a junction",
      "object": "junction",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Y",
        "J",
        "A1",
        "A2",
        "A3",
        "B1",
        "B2",
        "B3"
      ],
      "rows": 50,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "branches",
      "title": "Extract all branches of the Vistla tree",
      "topics": [
        "as.data.frame.vistla",
        "branches"
      ]
    },
    {
      "page": "cchain",
      "title": "Synthetic continuous data representing a simple mediator chain",
      "topics": [
        "cchain"
      ]
    },
    {
      "page": "chain",
      "title": "Synthetic data representing a simple mediator chain",
      "topics": [
        "chain"
      ]
    },
    {
      "page": "collapse",
      "title": "Collapse the vistla tree into a pairwise graph",
      "topics": [
        "collapse"
      ]
    },
    {
      "page": "ensemble",
      "title": "Construct the value for the ensemble argument",
      "topics": [
        "ensemble",
        "print.vistla_ensemble_control"
      ]
    },
    {
      "page": "flow",
      "title": "Construct the value for the flow argument",
      "topics": [
        "flow",
        "print.vistla_flow"
      ]
    },
    {
      "page": "hierarchy",
      "title": "Extract the vertex hierarchy from the vistla tree",
      "topics": [
        "hierarchy"
      ]
    },
    {
      "page": "junction",
      "title": "Synthetic data representing a junction",
      "topics": [
        "junction"
      ]
    },
    {
      "page": "mi_scores",
      "title": "Extract mutual information score matrix",
      "topics": [
        "mi_scores"
      ]
    },
    {
      "page": "mle_coerce",
      "title": "Basic discretisation of numerical features",
      "topics": [
        "mle_coerce"
      ]
    },
    {
      "page": "path_to",
      "title": "Extract a single path",
      "topics": [
        "path_to"
      ]
    },
    {
      "page": "paths",
      "title": "List all paths",
      "topics": [
        "paths"
      ]
    },
    {
      "page": "plot.vistla",
      "title": "Overview plot of the vistla tree",
      "topics": [
        "plot.vistla",
        "plot.vistla_plot",
        "print.vistla_plot"
      ]
    },
    {
      "page": "print.vistla",
      "title": "Print vistla objects",
      "topics": [
        "print.vistla",
        "print.vistla_hierarchy"
      ]
    },
    {
      "page": "prune",
      "title": "Prune the vistla tree",
      "topics": [
        "prune"
      ]
    },
    {
      "page": "vistla",
      "title": "Influence path identification with the Vistla algorithm",
      "topics": [
        "vistla",
        "vistla.data.frame",
        "vistla.default",
        "vistla.formula"
      ]
    },
    {
      "page": "write.dot",
      "title": "Export tree to a Graphviz DOT format",
      "topics": [
        "write.dot"
      ]
    }
  ],
  "_readme": "https://gitlab.com/mbq/vistla/raw/HEAD/README.md",
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "walkthrough.Rnw",
      "filename": "walkthrough.pdf",
      "title": "Vistla walkthrough",
      "engine": "utils::Sweave",
      "headings": [
        "Motivation",
        "Usage",
        "Further steps"
      ],
      "created": "2025-02-05 01:17:04",
      "modified": "2025-02-19 14:25:40",
      "commits": 3
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "vistla",
  "_universes": [
    "mbq",
    "gitlab-mbq"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:23.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/37cacf440842bdd6a85b31929e327968013ba8ff16426ca43d8a38781d56cfe8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-10-09T08:48:10.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/6b851aa9bc24f525b6d21239b2b3ab27a340091395bdfb61a87b0821fa30a393",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:17.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/5beea995dad064d3e163d4b36179070969f0a99b8f6626dbab6c8e6add4bfb1b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-10-09T08:48:03.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/b5f43775ac408e50a4210663f42c5110cbb6e9dcd14d8ba87c9fed2e2beadbb5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:46.000Z",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/43485103e111d6e5cadd18aba905baabf0880fd089a252201f2202b8bc946ea2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-10-09T08:51:32.000Z",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/e408ad82011042d2f20d515926ecd83fabeca5f628d1fe2d82f5de2405a72fe9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-10-09T08:48:14.000Z",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/e4d92a1b1b443b3648d4a26d212d8244c2a131df0436bc4f913e65f7a1a1f1d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-10-09T08:48:38.000Z",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/0eb831d91d426161f16911535b6a10d43288743af1e4baf3e32dccd7f5ff3816",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:41.000Z",
      "arch": "emscripten",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/a63b6ff5ba65472c8e3721271bc465d621bb6e7ce3b9e1a0d35bc9e201287c56",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-10-09T08:50:20.000Z",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/6fc1ddf51512cda04ac355dc4f851e8fb7e695436f0ff07fcb1b602f43af557e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:02.000Z",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/9caf54e853bc29281b6b4d0fffb071a4acd4800aba294f5cd1fe5979f769b4dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:15.000Z",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/025aee5eb81d91de676de223a5d5bd3f01494e1a1902ce698b9bfce11c584d30",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-10-09T08:50:47.000Z",
      "arch": "aarch64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/da95c5bca31a81f4c5678371a573a1e697fa69ffcf62f1cad9a253f265294e8c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-10-09T08:47:01.000Z",
      "arch": "x86_64",
      "commit": "43c6092c0bfcd9a2948f9df7064c0e7c213eff76",
      "fileid": "https://r2.ropensci.org/d0e96d71185712512ae462628aafc2ebd8581d6cdba2f047e7f86ec21abd7d08",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mbq/actions/runs/37906679255"
    }
  ]
}